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Potential of Fourier Transform Mass Spectrometry (Orbitrap and Ion Cyclotron Resonance) for Speciation of the Selenium Metabolome in Selenium-Rich Yeast
Katarzyna Bierla, Giovanni Chiappetta, Joëlle Vinh, Ryszard Lobinski and Joanna Szpunar
Front. Chem., 09 December 2020 | doi : 10.3389/fchem.2020.612387, hal-03095520 full text link
Peptides Derived From Insulin Granule Proteins Are Targeted by CD8 + T Cells Across MHC Class I Restrictions in Humans and NOD Mice.
Marie Eliane Azoury, Mahmoud Tarayrah, Georgia Afonso, Aurore Pais Maikel Colli, Claire Maillard, Cassandra Lavaud, Laure Alexandre-Heymann, Sergio Gonzalez-Duque, Yann Verdier, Joelle Vinh, Sheena Pinto, Soren Buus, Danièle Dubois-Laforgue, Etienne Larger, Jean-Paul Beressi, Graziella Bruno, Decio Eizirik, Sylvaine You, Roberto Mallone.
Diabetes, American Diabetes Association, 2020, 69 (12), pp.2678-2690. doi :10.2337/db20-0013. hal-03086542
Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions.
Arivalagan J, Marie B, Chiappetta G, Vinh J, Gallet X, Lebon M, M’Zoudi S, Dubois P, Berland S, Marie A.
Sci Total Environ. 2020 Nov 25;745:140878. doi : 10.1016/j.scitotenv.2020.140878. Epub 2020 Jul 19. PMID: 32721612 hal-03086554v1 full text link
S-nitrosylation affects TRAP1 structure and ATPase activity and modulates cell response to apoptotic stimuli.
Faienza F, Lambrughi M, Rizza S, Pecorari C, Giglio P, Salamanca Viloria J, Allega MF, Chiappetta G, Vinh J, Pacello F, Battistoni A, Rasola A, Papaleo E, Filomeni G.
Biochem Pharmacol. 2020 Jun;176:113869. doi : 10.1016/j.bcp.2020.113869. Epub 2020 Feb 21. PMID: 32088262.hal-03086569v1 full text link
Development of Immobilized Enzyme Reactors for the characterization of the glycosylation heterogeneity of a protein.
Eskenazi N*, Perchepied S*, Giangrande C, Camperi J, Fournier T, Vinh J, Delaunay N, Pichon V.
Talanta. 2020Jan 1;206:120171. doi: 10.1016/j.talanta.2019.120171. Epub 2019 Jul 23. Erratum in: Talanta. 2020 Mar 1;209:120568. PMID: 31514875. hal-02330897v1 full text link
* equally contributed
The zoonotic pathogen Leptospira interrogans mitigates environmental stress through cyclic-di-GMP-controlled biofilm production.
Thibeaux R, Soupé-Gilbert ME, Kainiu M, Girault D, Bierque E, Fernandes J, Bähre H, Douyère A, Eskenazi N, Vinh J, Picardeau M, Goarant C.
NPJ Biofilms Microbiomes, [London]: Springer Nature published in partnership with Nanyang Technological University. 2020 Jun 12;6(1):24. doi: 10.1038/s41522-020-0134-1. PMID: 32532998. hal-02867707v1 full text link
On-Chip Sample Preparation Using a ChipFilter Coupled to NanoLC-MS/MS for Bottom-Up Proteomics.
Ndiaye MM, Ta HP, Chiappetta G, Vinh J.
J Proteome Res.2020 May 8. doi: 10.1021/acs.jproteome.9b00832. Epub ahead of print. PMID:32343577. hal-03086559v1 full text link
Investigation of serum proteome homeostasis during radiation therapy by a quantitative proteomics approach.
Ouerhani A*, Chiappetta G*, Souiai O, Mahjoubi H, Vinh J
Biosci Rep. 2019 Jul 29;39(7). pii: BSR20182319. doi: 10.1042/BSR20182319. hal-02358307
* equally contributed
Establishing traceability chains for PCT quantification
H.H. Huynh A. Boeuf B. Lalere S. Vaslin-Reimann D. Vincent J. Vinh
Clinica Chimica Acta, Elsevier, 2019, 493, pp.S17. doi : 10.1016/j.cca.2019.03.045, hal-03086584v1
Contribution of proteases and cellulases produced by solid-state fermentation to the improvement of corn ethanol production.
Anaïs Guillaume, Aurore Thorigné, Yoann Carré, Joëlle Vinh and Loïc Levavasseur
Bioresources and Bioprocessing 2019 Published: FEB 7 2019 doi : 10.1186/s40643-019-0241-0 hal-03086587v1 full text link
Global host molecular perturbations upon in situ loss of bacterial endosymbionts in the deep-sea mussel Bathymodiolus azoricus assessed using proteomics and transcriptomics .
Détrée C, Haddad I, Demey-Thomas E, Vinh J, Lallier FH, Tanguy A, Mary J
BMC Genomics. 2019 Feb 6;20(1):109. doi: 10.1186/s12864-019-5456-0. hal-03086587v1 full text link
Proteomics and proteoforms: Bottom-up or top-down, how to use high-resolution mass spectrometry to reach the Grail
J. Vinh
CHAPTER 17. B. Kanawati & P. Schmitt-Kopplin. Fundamentals and Applications of Fourier Transform Mass Spectrometry, Elsevier, pp.529-567, 2019, 9780128140130. doi : 10.1016/B978-0-12-814013-0.00017-X. hal-02358384 full text link
Benzoquinone, a leukemogenic metabolite of benzene, catalytically inhibits the protein tyrosine phosphatase PTPN2 and alters STAT1 signaling.
Romain Duval, Linh-Chi Bui, Cécile Mathieu, Qing Nian, Jérémy Berthelet, Ximing Xu, Iman Haddad, Joelle Vinh, Jean-Marie Dupret, Florent Busi, Fabien Guidez, Christine Chomienne, Fernando Rodrigues-Lima
Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2019, 294 (33), pp.12483-12494. doi :10.1074/jbc.RA119.008666. hal-02358303
Conventional and Neo-Antigenic Peptides Presented by ? Cells Are Targeted by Circulating Naïve CD8+ T Cells in Type 1 Diabetic and Healthy Donors.
Gonzalez-Duque S, Azoury ME, Colli ML, Afonso G, Turatsinze JV, Nigi L, Lalanne AI, Sebastiani G, Carré A, Pinto S, Culina S, Corcos N, Bugliani M, Marchetti P, Armanet M, Diedisheim M, Kyewski B, Steinmetz LM, Buus S, You S, Dubois-Laforgue D, Larger E, Beressi JP, Bruno G, Dotta F, Scharfmann R, Eizirik DL, Verdier Y, Vinh J, Mallone R
Cell Metab. 2018 Jul 23. pii: S1550-4131(18)30450-9. doi: 10.1016/j.cmet.2018.07.007. [Epub ahead of print] PubMed PMID: 30078552. hal:inserm-01918834v1 full text link
Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses.
Sotton B, Paris A, Le Manach S, Blond A, Lacroix G, Millot A, Duval C, Huet H, Qiao Q, Labrut S, Chiappetta G, Vinh J, Catherine A, Marie B.
Sci Rep. 2018 Mar 6;8(1):4270. doi: 10.1038/s41598-018-20638-0. PubMed PMID: 29511217; PubMed Central PMCID: PMC5840370, Author Correction hal-02358311v1 full text link
Identification of BAG3 target proteins in anaplastic thyroid cancer cells by proteomic analysis.
Galdiero F, Bello AM, Spina A, Capiluongo A, Liuu S, De Marco M, Rosati A, Capunzo M, Napolitano M, Vuttariello E, Monaco M, Califano D, Turco MC, Chiappetta G, Vinh J, Chiappetta G.
Oncotarget. 2018 Jan 3;9(8):8016-8026. doi : 10.18632/oncotarget.23858. eCollection 2018 Jan 30. PubMed PMID: 29487711; PubMed Central PMCID: PMC5814278. hal-02358316 full text link
Physiological effects caused by microcystin-producing and non-microcystin producing Microcystis aeruginosa on medaka fish: A proteomic and metabolomic study on liver.
Le Manach S, Sotton B, Huet H, Duval C, Paris A, Marie A, Yépremian C, Catherine A, Mathéron L, Vinh J, Edery M, Marie B.
Environ Pollut. 2018 Mar;234:523-537. doi: 10.1016/j.envpol.2017.11.011. Epub 2017 Dec 21. PubMed PMID: 29220784. [hal-02358315v1]
Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.
Rayapuram N, Bigeard J, Alhoraibi H, Bonhomme L, Hesse AM, Vinh J, Hirt H, Pflieger D.
Mol Cell Proteomics. 2018 Jan;17(1):61-80. doi: 10.1074/mcp.RA117.000135. Epub 2017 Nov 22. PubMed PMID: 29167316; PubMed Central PMCID: PMC5750851. hal-02083418v1 full text link WOS : 000419169700007, PRODINRA : 427289
Chromophore Renewal and Fluorogen-Binding Tags: A Match Made to Last
Pimenta FM, Chiappetta G, Le Saux T, Vinh J, Jullien L, Gautier A.
Sci Rep. 2017 Sep 26;7(1):12316. doi: 10.1038/s41598-017-12400-9. PubMed PMID: 28951577 hal-01636511v1 full text link
Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses
Sotton B, Paris A, Le Manach S, Blond A, Lacroix G, Millot A, Duval C, Huet H, Qiao Q, Labrut S, Chiapetta G, Vinh J, Catherine A, Marie B..
Sci Rep. 2017 Jun 22;7(1):4051. doi: 10.1038/s41598-017-04423-z. PubMed PMID: 28642462 hal-01636500v1 full text link, PRODINRA : 409826, WOS : 000403874900034
Uncovering the repertoire of endogenous flaviviral elements in Aedes mosquito genomes
Suzuki Y, Frangeul L, Dickson LB, Blanc H, Verdier Y, Vinh J, Lambrechts L, Saleh MC.
J Virol. 2017 May 24. pii: JVI.00571-17. doi: 10.1128/JVI.00571-17. [Epub ahead of print] PubMed PMID: 28539440, PUBMEDCENTRAL : PMC5512259, hal-01636504v1 full text link,
Combination of Selective Immunoassays and Mass Spectrometry to Characterize Preproghrelin-Derived Peptides in Mouse Tissues
Hassouna R, Grouselle D, Chiappetta G, Lipecka J, Fiquet O, Tomasetto C, Vinh J, Epelbaum J, Tolle V.
Front Neurosci. 2017 Apr 20;11:211. doi: 10.3389/fnins.2017.00211. eCollection 2017. PubMed PMID: 28473748; PubMed Central PMCID: PMC5397466. hal-01636506v1 full text link
Identification of a polygalacturonase (Cup s 2) as the major CCD-bearing allergen in Cupressus sempervirens pollen
Shahali Y, Sutra JP, Hilger C, Swiontek K, Haddad I, Vinh J, Guilloux L, Charpin D, Sénéchal H, Poncet P.
Allergy. 2017 Apr 25. doi: 10.1111/all.13191. [Epub ahead of print] PubMed PMID: 28439939. hal-01636508v1
Quantitative analysis of the cysteine redoxome by iodoacetyl tandem mass tags
Shakir S, Vinh J, Chiappetta G.
Anal Bioanal Chem. 2017 Jun;409(15):3821-3830. doi: 10.1007/s00216-017-0326-6. Epub 2017 Apr 7. PubMed PMID: 28389918; PubMed Central PMCID: PMC5427158. hal-01636511v1 full text link
Human Immunoglobulin Heavy Gamma Chain Polymorphisms: Molecular Confirmation Of Proteomic Assessment
Dambrun M, Dechavanne C, Emmanuel A, Aussenac F, Leduc M, Giangrande C, Vinh J, Dugoujon JM, Lefranc MP, Guillonneau F, Migot-Nabias F
Mol Cell Proteomics. 2017 May;16(5):824-839. doi: 10.1074/mcp.M116.064733. Epub 2017 Mar 6. PubMed PMID: 28265047; PubMed Central PMCID: PMC5417824. hal-01636513v1 full text link
Molecular Mechanisms of Allosteric Inhibition of Brain Glycogen Phosphorylase by Neurotoxic Dithiocarbamate Chemicals
Mathieu C, Bui LC, Petit E, Haddad I, Agbulut O, Vinh J, Dupret JM, Rodrigues-Lima F
J Biol Chem. 2017 Feb 3;292(5):1603-1612. doi: 10.1074/jbc.M116.766725. Epub 2016 Dec 13. PubMed PMID: 27965358; PubMed Central PMCID: PMC5290938. hal-01636517v1 full text link
An evolutionary conserved Hexim1 peptide binds to the Cdk9 catalytic site to inhibit P-TEFb
Kobbi L, Demey-Thomas E, Braye F, Proux F, Kolesnikova O, Vinh J, Poterszman A, Bensaude O
Proc Natl Acad Sci U S A. 2016 Oct 25. pii: 201612331. [Epub ahead of print] DOI : 10.1073/pnas.1612331113 PubMed PMID: 27791144; PubMed Central PMCID: PMC5111705. hal-01415487v1 full text link
An Isozyme-specific Redox Switch in Human Brain Glycogen Phosphorylase Modulates Its Allosteric Activation by AMP
Mathieu C, Duval R, Cocaign A, Petit E, Bui LC, Haddad I, Vinh J, Etchebest C, Dupret JM, Rodrigues-Lima F
J Biol Chem. 2016 Nov 11;291(46):23842-23853. Epub 2016 Sep 22. DOI : 10.1074/jbc.M116.757062, PubMed PMID: 27660393; PubMed Central PMCID: PMC5104910. hal-01415497v1 full text link
Deep sexual dimorphism in adult medaka fish liver highlightedby multi-omic approach
Qiao Q, Le Manach S, Sotton B, Huet H, Duvernois-Berthet E, Paris A, Duval C, Ponger L, Marie A, Blond A, Mathéron L, Vinh J, Bolbach G, Djediat C, Bernard C, Edery M, Marie B
Sci Rep. 2016 Aug 26;6:32459. doi: 10.1038/srep32459.PubMed PMID: 27561897. hal-01368277v1 full text link
A partial metabolic pathway enables group b streptococcus to overcome quinone deficiency in a host bacterial community
Franza T, Delavenne E, Derré-Bobillot A, Juillard V, Boulay M, Demey E, Vinh, J, Lamberet G, Gaudu P
Mol Microbiol. 2016 Jun 22. doi: 10.1111/mmi.13447. PubMed PMID: 27328751. [hal-02928680v1]
Multi-Stage Mass Spectrometry Analysis of Sugar-Conjugated ?-Turn Structures to be Used as Probes in Autoimmune Diseases
Giangrande C, Auberger N, Rentier C, Papini AM, Mallet JM, Lavielle S, Vinh J
J Am Soc Mass Spectrom. 2016 Jan 4 DOI : 10.1007/s13361-015-1321-9, [hal-03150394v1]
Immunoproteomics of non water-soluble allergens from 4 legumes flours: peanut, soybean, sesame and lentil.
Bouakkadia H, Boutebba A, Haddad I, Vinh J, Guilloux L, Sutra JP, Sénéchal H, Poncet P.
Ann Biol Clin (Paris). 2015 Dec1;73(6):690-704. DOI : 10.1684/abc.2015.1089, PubMed PMID: 26635049. [hal-01415532v1]
Perturbations of the cerebrovascular matrisome: a convergent mechanism in small vessel disease of the brain?.
Joutel A, Haddad I, Ratelade J, Nelson MT.
J Cereb Blood Flow Metab. 2015 Apr 8. doi: 10.1038/jcbfm.2015.62. [Epub ahead of print] Review. PubMed PMID: 25853907; PubMed Central PMCID: PMC4758555.
Identification by FT-ICR-MS of Camelus dromedarius ?-lactalbumin variants as the result of nonenzymatic deamidation of Asn-16 and Asn-45.
Si Ahmed Zennia S, Mati A, Saulnier F, Verdier Y, Chiappetta G, Mulliert G, Miclo L, Vinh J, Girardet JM.
Food Chem. 2015 Nov 15;187:305-13. doi: 10.1016/j.foodchem.2015.04.036. Epub 2015 Apr 22. [hal-01522025v1], PRODINRA : 309512, WOS : 000355885400042
Role of the Tau N-terminal region in microtubule stabilization revealed by new endogenous truncated forms.
Derisbourg M, Leghay C, Chiappetta G, Fernandez-Gomez FJ, Laurent C, Demeyer D, Carrier S, Buée-Scherrer V, Blum D,Vinh J, Sergeant N, Verdier Y, Buée L, Hamdane M.
Sci Rep. 2015 May 14;5:9659. DOI : 10.1038/srep09659, hal-01659458v1 full text link
RACK1 controls IRES-mediated translation of viruses.
Majzoub K, Hafirassou ML, Meignin C, Goto A, Marzi S, Fedorova A, Verdier Y, Vinh J, Hoffmann JA, Martin F, Baumert TF, Schuster C, Imler JL.
Cell. 2014 Nov 20;159(5):1086-95. doi: 10.1016/j.cell.2014.10.041. hal-02358353v1 full text link
Landscape of protein-protein interactions in Drosophila immune deficiency signaling during bacterial challenge.
Fukuyama H, Verdier Y, Guan Y, Makino-Okamura C, Shilova V, Liu X, Maksoud E, Matsubayashi J, Haddad I, Spirohn K, Ono K, Hetru C, Rossier J, Ideker T, Boutros M, Vinh J, Hoffmann JA.
Proc Natl Acad Sci U S A. 2013 Jun 7. [Epub ahead of print] PubMed PMID: 23749869.
Abnormal recruitment of extracellular matrix proteins by excess Notch3ECD: a new pathomechanism in CADASIL.
Monet-Leprêtre M, Haddad I, Baron-Menguy C, Fouillot-Panchal M, Riani M, Domenga-Denier V, Dussaule C, Cognat E, Vinh J, Joutel A.
Brain. 2013 Jun;136(Pt 6):1830-45. doi: 10.1093/brain/awt092. Epub 2013 May 6. PubMed PMID: 23649698; PubMed Central PMCID: PMC3673461.
Tau pathology modulates Pin1 post-translational modifications and may be relevant as biomarker.
Ando K, Dourlen P, Sambo AV, Bretteville A, Bélarbi K, Vingtdeux V, Eddarkaoui S, Drobecq H, Ghestem A, Bégard S, Demey-Thomas E, Melnyk P, Smet C, Lippens G, Maurage CA, Caillet-Boudin ML, Verdier Y, Vinh J, Landrieu I, Galas MC, Blum D,Hamdane M, Sergeant N, Buée L.
Neurobiol Aging. 2013 Mar;34(3):757-69. doi: 10.1016/j.neurobiolaging.2012.08.004. Epub 2012 Aug 25. PMID: 22926167.
Mass Spectrometry Detection of G3m and IGHG3 Alleles and Follow-Up of Differential Mother and Neonate IgG3.
Dechavanne C, Guillonneau F, Chiappetta G, Sago L, Lévy P, Salnot V, Guitard E, Ehrenmann F, Broussard C, Chafey P, Le Port A, Vinh J, Mayeux P, Dugoujon JM, Lefranc MP, Migot-Nabias F.
PLoS One 2012;7(9):e46097.
Epub 2012 Sep 25. PubMed PMID: 23049948.
Novel method to investigate protein carbonylation by iTRAQ strategy.
Palmese A, De Rosa C, Chiappetta G, Marino G, Amoresano A.
Anal Bioanal Chem. 2012 Aug 29.
PMID: 22926130
On-bead tryptic proteolysis: An attractive procedure for LC-MS/MS analysis of the Drosophila caspase 8 protein complex during immune response against bacteria.
Fukuyama H, Ndiaye S, Hoffmann J, Rossier J, Liuu S, Vinh J, Verdier Y.
J Proteomics. 2012 Mar 17. [Epub ahead of print]
PMID: 22450469
Proteomics of cypress pollen allergens using double and triple one-dimensional electrophoresis.
Shahali Y, Sutra JP, Haddad I, Vinh J, Guilloux L, Peltre G, Sénéchal H, Poncet P..
Electrophoresis. 2012 Feb;33(3):462-9. doi: 10.1002/elps.201100324.
PMID: 22287175
Platelet type III collagen binding protein (TIIICBP) presents high biochemical and functional similarities with kindlin-3.
Djaafri I, Maurice P, Labas V, Vinh J, Lemesle M, Arbeille B, Legrand C, Mourah S, Fauvel-Lafeve F.
Biochimie. 2012 Feb;94(2):416-26. Epub 2011 Aug 19. PubMed PMID: 21871525.
Proteomic analysis of major and minor allergens from isolated pollen cytoplasmic granules.
Abou Chakra OR, Sutra JP, Demey Thomas E, Vinh J, Lacroix G, Poncet P, Sénéchal H.
J Proteome Res. 2012 Feb 3;11(2):1208-16. Epub 2012 Jan 19.
PubMed PMID: 22188203
Reversed-phase HPLC and hyphenated analytical strategies for peptidomics.
Hesse AM, Ndiaye S, Vinh J.
Methods Mol Biol. 2011;789:203-21.
PMID: 21922410
Proteomics New insights in cypress pollen allergen repertoire: what for? How far?
Poncet, P; Shahali, Y; Sutra, JP; Chollet-Martin, S; Haddad, I; Vinh, J; Charpin, D; Mari, A; Guilloux, L; Peltre, G; Senechal, H.
10th World Congress on Inflammation Location: Paris, France Jun 25-29, 2011, Inflammation Research 2011 60(1): 76-77
Platelet type III collagen binding protein (TIIICBP) presents high biochemical and functional similarities with kindlin-3.
Djaafri I, Maurice P, Labas V, Vinh J, Lemesle M, Arbeille B, Legrand C, Mourah S, Fauvel-Lafeve F.
Biochimie. 2011 Aug 19.
PMID: 21871525
Proteomic analysis of NME1/NDPK A null mouse liver: evidence for a post-translational regulation of annexin IV and EF-1B?
Bruneel A, Wendum D, Labas V, Mulner-Lorillon O, Vinh J, Bosselut N, Ballot E, Baudin B, Housset C, Dabernat S, Lacombe ML, Boissan M.
Naunyn Schmiedebergs Arch Pharmacol. 2011 Oct;384(4-5):407-19. Epub 2011 May 4. PubMed PMID: 21541759
Differential RNA-binding activity of the hnRNP G protein correlated with the sex genotype in the amphibian oocyte.
Kanhoush R, Praseuth D, Perrin C, Chardard D, Vinh J, Penrad-Mobayed M.
Nucleic Acids Res. 2011 May;39(10):4109-21.
Epub 2011 Jan 29. PubMed PMID: 21278421; PubMed Central PMCID: PMC3105392.
Free Article
T cells recognizing a Peptide contaminant undetectable by mass spectrometry.
Brezar V, Culina S, Osterbye T, Guillonneau F, Chiappetta G, Verdier Y, Vinh J, Wong FS, Buus S, Mallone R.
PLoS One. 2011;6(12):e28866. Epub 2011 Dec 14. PMID:22194932; PubMed Central PMCID: PMC3237501 Free Article